I just ran into this problem today. I decided to solve by overriding the assembly and workspace folder in the server configuration
I set the Workspace Root Directory to c: / ws / $ {ITEM_FULL_NAME} / work and Build Root Directory to c: / ws / $ {ITEM_FULL_NAME} / builds
ITEM_FULL_NAME is the name of the job, and since the job name has "/" and not% 2F, this will cause the folder to look like c: \ ws \ project \ branch \ name \ work, This should solve your problem.
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