Well, as long as you realize that obfuscation is not safe, there are some simple ways to obfuscate. You do not indicate how your keys are stored, so I will assume that they are stored in binary form in a file.
The simplest obfuscation is xorwith some meaning - I will use DEADBEEF just because it sounds delicious:
keyFile <- "c:/foo.bin"
obfuscatedKey <- readBin(keyFile, "raw", file.info(keyFile)$size)
key <- xor(obfuscatedKey , as.raw(c(0xde, 0xad, 0xbe, 0xef)))
- , xor , obfuscatedKey .
. "" (42), :
key <- 101:110
n <- length(key)
set.seed(42, "Mersenne-Twister")
perm <- sample.int(n)
obfuscatedKey <- key[perm]
orgKey <- integer(n)
set.seed(42, "Mersenne-Twister")
perm <- sample.int(n)
orgKey[perm] <- obfuscatedKey
identical(key, orgKey)
... , , ...