Velo has moved the flexmojos code base to Sonatype, we are currently updating the site. Until the site is ready, you can read the latest information on Flexmojos in the Sonatype Forge quiz: https://docs.sonatype.org/display/FLEXMOJOS/Home
There is a website for flexmojos at http://flexmojos.sonatype.org
Flexmojos chapter in Maven: the final guide is still under development, but if you read it, you'll notice that there is a big difference between previous versions of Flexmojos and the newer version 3.0. Namely, you can depend on the repository hosted on repository.sonatype.org to get all the necessary Flex open source artifacts.
What is the difference between super-POM? The quick answer is that the upcoming release 3.1 (this week) is about to move away from using super POM to add to all plugin information. Using typed Super POMs is not compatible with how most organizations use Maven. Typically, a project has a top-level corporate POM or POM. With the release of Flexmojos 3.1, you'll see more stand-alone POMs from the flexmojos archetypes that will allow you to integrate Flexmojos projects into larger and more complex multi-module Maven projects.
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