If you are not using Peristance and the application is not working, you can remove it and then restart it without rebooting.
In addition, instead of using the application manager, you can use the javaloader.exe file that comes with eclipse sdk located in the bin sdk directory to delete or download tracks
Example .bat file
cd C:\Program Files\Eclipse\plugins\net.rim.ejde.componentpack6.0.0_6.0.0.29\components\simulator java -jar "C:\Program Files\Eclipse\plugins\net.rim.ejde.componentpack6.0.0_6.0.0.29\bin\SignatureTool.jar" -a -c -p myPassword *.cod "C:\Program Files\Eclipse\plugins\net.rim.ejde.componentpack6.0.0_6.0.0.29\bin\javaloader" -u load myCodFiles.cod
I also personally debug JDE because it is much less laggy than an eclipse, but it is a personal choice.
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