grep php source for php_stream_open_wrapper_ex calls that should give PHP_FUNCTION that interact directly with wrappers.
A rough and probably partially incorrect list ( -B 100 not accurate):
$ find . -name '*.c'| xargs grep -B 100 php_stream_open_wrapper_ex| grep PHP_FUNCTION ./ext/standard/url.c-PHP_FUNCTION(rawurlencode) ./ext/standard/url.c-PHP_FUNCTION(rawurldecode) ./ext/standard/url.c-PHP_FUNCTION(get_headers) ./ext/standard/file.c-PHP_FUNCTION(file_get_contents) ./ext/standard/file.c-PHP_FUNCTION(file_put_contents) ./ext/standard/file.c-PHP_FUNCTION(file) ./ext/standard/file.c-PHP_FUNCTION(tempnam) ./ext/standard/file.c-PHP_FUNCTION(mkdir) ./ext/standard/file.c-PHP_FUNCTION(rmdir) ./ext/standard/file.c-PHP_FUNCTION(readfile) ./ext/oci8/oci8_interface.c-PHP_FUNCTION(oci_lob_export) ./ext/hash/hash.c-PHP_FUNCTION(hash) ./ext/hash/hash.c-PHP_FUNCTION(hash_file) ./ext/hash/hash.c-PHP_FUNCTION(hash_update) ./ext/hash/hash.c-PHP_FUNCTION(hash_update_stream) ./ext/hash/hash.c-PHP_FUNCTION(hash_update_file)
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