Well, there are many ways to store data in Adroid: http://developer.android.com/guide/topics/data/data-storage.html
If you are using a web application on Android, you need to use the data store for web applications: http://diveintohtml5.ep.io/storage.html .
If you still want to keep the idea of ββaccessing the file system through a web application, perhaps this tutorial can help you: http://www.vogella.de/articles/AndroidFileSystem/article.html - remember the permissions.
Although, if you need to store data on an Android system, you should choose an Android application, rather than using a web application to manage your local data store. You can retrieve data from your web application using the URL connection (http://developer.android.com/reference/java/net/URLConnection.html) and manage storage through the Android application.
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