I'm not sure if you solved it now or not, but you can easily generate .mat files from .daq files in matlab using daqread. In the command window:
Data = daqread(mydata.daq); cd(saveDir) save('Data','Data')
A data variable is a .mat file. This can easily be added to the file directory scan feature. Reading in python is also a simple use of the scipy module. For example, from the interpreter:
from scipy.io import loadmat data = loadmat('Data.mat')
There might also be a boot submodule .daq somewhere in scipy, but you have to look.
Hope this helps!
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