And the all-R version, without a mouse (I was almost there Roman!):
download.file("http://mouse.cs.ucla.edu/emma/emma_1.1.2.tar.gz", destfile=paste(getwd(),"/emma/emma_1.1.2.tar.gz",sep="")) untar(paste(getwd(),"/emma/emma_1.1.2.tar.gz",sep=""), compressed = "gzip") source(paste(getwd(),"/emma/R/emma.R",sep=""))
in which a new directory (emma /) will be created in your current working directory.
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