I do not know cpplint.py , but you should be able to run any tool from Eclipse as an "external tool."
See below Run >> Externals Tools
Arguments can be parameterized , so you can include the path to the current project or the like. The output is placed in the console view, and if the messages from the tool are similar to messages from other tools (for example, "file: line: message"), you should also have hyperlinks from the corresponding files.
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