Elijah, I also had the same problem with system () and exec (), which is NOT included in php.
Just download the php.ini file located at the root of your site via FTP and you will find something like this:
register_globals = On safe_mode = Off enable_dl = On disable_functions = "exec,passthru,shell_exec,proc_open,popen,system,curl_exec,curl_multi_exec,parse_ini_file,show_source"
Just delete exec (the first word in the line between ""), which is located in the disable_functions line, and also delete the system,
Remember to remove coma (,) in two words.
It worked for me.
Keep in mind, I myself created this php.ini file about a month ago, but I don’t know why, by changing the php version in cPanel, exec and system returned.
Also follow the guidelines given here with plasmid87 to get it back when you're done creating a clone of your site.
Mario bruno
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