In Pharo and Squeak, if installed, you can enter CommandShell open. , and it will open a command window, which basically looks like a “bash shell” or “terminal window”, but uses almost the default microscopic size of the default font. I can’t figure out how to change this.
I realized that the general approach in smalltalk is to look at the implementation of the class and see if you can learn something that you could tell the class to tell it what you want, or in some way you can change class so that it responds to something else for some other class, causing the desired effect. Something like anInstanceOfCommandShell someViewOrControllerThingy setDefaultFont:blahblahblah or something like that.
CommandShell seems to use ShellWindowMorph and accepts the setFont message. I am new to Smalltalk and Squeak and don't know what to do next.
I am using Pharo 2.0, but if someone knows how to do this in Squeak, I am sure that it will be about the same.
Please note that I found the pharo settings and that regular changes to the settings affect the main transcript window, but do not affect the special CommandShellTranscript or its contents.

The code I use to change the rest of the fonts programmatically was the answer from another question that says:
|font codeFont| font := LogicalFont familyName: 'Consolas' pointSize: 10. codeFont := LogicalFont familyName: 'Consolas' pointSize: 9. StandardFonts listFont: codeFont. ...
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