I usually use the paste tool for such applications (although Emacs, though ..). If you are using Linux, it should be available by default.
It's simple:
$ paste file1 file2 > file3
which will merge the two files 'file1' and 'file2' into the output file 'file3' as you requested. By default, TABs are used as column separators, but this can be changed using the -d option.
alexurba
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