If you execute the code in the example you specified, the size of the <circle> elements will be determined here:
node.append("circle") .attr("r", function(d) { return dr; })
To fix the size of the circles to, say, 50 , you can do this:
node.append("circle") .attr("r", function(d) { return 50; })
Update
This, however, will break the layout, as indicated in the comment. To fix this, you can provide the same value for each node:
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