I found myself in a similar situation when I used netbeans ide. I read the following thread that helped:
http://forums.netbeans.org/ptopic28011.html
The swing application frame seems to save the size of the application window in a subfolder in your home directory (for Windows, the "Application Data" folder for Linux, in your home folder "~ /").
For example, for my application, "CrapApp" swing saved information about the size of the last window in the subfolder "~ / .CrapApp /" to a file called "mainFrame.session.xml".
So, no matter how I resized the window in the designer, when I start it seems to ignore it and instead load the window size from the settings inside this subfolder.
So, I decided to delete this subfolder with the saved settings, for example, in my case, "rm -rf ~ / .CrapApp /"
Then the problem disappeared, and I was able to resize in the designer and run the application with this size window now visible.
It made me want to find out what caused this problem. I noticed that just starting the application inside ide netbeans and closing it did not create a subfolder.
After a little use of my application, I noticed that the next action caused the generation of this subfolder ~ ~ .CrapApp /.
- Going to my Help → About application
- Click the Close button in the dialog box that appears.
- Exit Application
And now the subfolder "~ / .CrapApp /" appears again. This help / dialog was automatically generated by netbeans ide, so I didn't really bother with it, but that seemed to be the culprit in my case.
Perhaps this may be a mistake in netbeans ide, I am using a somewhat old version (v6.8), which seems to be around the era of your original message, too.