OK, this is not easy, but obvious enough as soon as you find it. From an RSE perspective, right-click on the folder containing the source files and select "Create Remote Project." This seems to work pretty well, but I still have one problem: it seems the debugger wants to get a local copy of the file that I am debugging, and I do not find the copy of RSE local sufficient. So now I have to copy the file from the remote server to my workstation before starting debugging. It seems to hit the goal of integration.
Is there a better way? I look at SSH file systems, but I really don't want to do this. It seems to me that I'm so close.
Edit 2011-11-09: This has recently been reviewed by PyDev developers. Today, installing the PyDev nightly update adds an option to retrieve the source from the remote server. More details here .
zenzic
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