I have encountered a similar problem in the past. The problem in my case was that I was adding the same DLL from the file system and then had the nuget package as well as for the same component.
In your case, I see that you have a nuget package with a different version of "System.Data.SQLite.EF6.1.0.97.0". I would do below a. Remove all links (static dlls, if any).
b. Add links from the nuget package.
BTW, the sln file you sent does not have csproj (therefore, it cannot open proj files).
Lalit Singh Rana
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