The spark mode on the yarn ends with "Output state: -100. Diagnostics: Container released on * lost * node"

Question

I am trying to load a database with 1TB data to fix on AWS using the latest EMR. And the operating time is so long that it was not completed even after 6 hours, but after starting 6h30m, I get an error message that Container issued on the lost node, and then the operation failed. The logs are as follows:

16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144178.0 in stage 0.0 (TID 144178, ip-10-0-2-176.ec2.internal): ExecutorLostFailure (executor 5 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000006 on host: ip-10-0-2-176.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144181.0 in stage 0.0 (TID 144181, ip-10-0-2-176.ec2.internal): ExecutorLostFailure (executor 5 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000006 on host: ip-10-0-2-176.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144175.0 in stage 0.0 (TID 144175, ip-10-0-2-176.ec2.internal): ExecutorLostFailure (executor 5 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000006 on host: ip-10-0-2-176.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144213.0 in stage 0.0 (TID 144213, ip-10-0-2-176.ec2.internal): ExecutorLostFailure (executor 5 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000006 on host: ip-10-0-2-176.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 INFO scheduler.DAGScheduler: Executor lost: 5 (epoch 0) 16/07/01 22:45:43 WARN cluster.YarnSchedulerBackend$YarnSchedulerEndpoint: Container marked as failed: container_1467389397754_0001_01_000007 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 INFO storage.BlockManagerMasterEndpoint: Trying to remove executor 5 from BlockManagerMaster. 16/07/01 22:45:43 INFO storage.BlockManagerMasterEndpoint: Removing block manager BlockManagerId(5, ip-10-0-2-176.ec2.internal, 43922) 16/07/01 22:45:43 INFO storage.BlockManagerMaster: Removed 5 successfully in removeExecutor 16/07/01 22:45:43 ERROR cluster.YarnClusterScheduler: Lost executor 6 on ip-10-0-2-173.ec2.internal: Container marked as failed: container_1467389397754_0001_01_000007 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 INFO spark.ExecutorAllocationManager: Existing executor 5 has been removed (new total is 41) 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144138.0 in stage 0.0 (TID 144138, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 6 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000007 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144185.0 in stage 0.0 (TID 144185, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 6 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000007 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144184.0 in stage 0.0 (TID 144184, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 6 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000007 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144186.0 in stage 0.0 (TID 144186, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 6 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000007 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN cluster.YarnSchedulerBackend$YarnSchedulerEndpoint: Container marked as failed: container_1467389397754_0001_01_000035 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 INFO scheduler.DAGScheduler: Executor lost: 6 (epoch 0) 16/07/01 22:45:43 INFO storage.BlockManagerMasterEndpoint: Trying to remove executor 6 from BlockManagerMaster. 16/07/01 22:45:43 INFO storage.BlockManagerMasterEndpoint: Removing block manager BlockManagerId(6, ip-10-0-2-173.ec2.internal, 43593) 16/07/01 22:45:43 INFO storage.BlockManagerMaster: Removed 6 successfully in removeExecutor 16/07/01 22:45:43 ERROR cluster.YarnClusterScheduler: Lost executor 30 on ip-10-0-2-173.ec2.internal: Container marked as failed: container_1467389397754_0001_01_000035 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144162.0 in stage 0.0 (TID 144162, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 30 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000035 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 INFO spark.ExecutorAllocationManager: Existing executor 6 has been removed (new total is 40) 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144156.0 in stage 0.0 (TID 144156, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 30 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000035 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144170.0 in stage 0.0 (TID 144170, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 30 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000035 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 WARN scheduler.TaskSetManager: Lost task 144169.0 in stage 0.0 (TID 144169, ip-10-0-2-173.ec2.internal): ExecutorLostFailure (executor 30 exited caused by one of the running tasks) Reason: Container marked as failed: container_1467389397754_0001_01_000035 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 16/07/01 22:45:43 INFO scheduler.DAGScheduler: Executor lost: 30 (epoch 0) 16/07/01 22:45:43 WARN cluster.YarnSchedulerBackend$YarnSchedulerEndpoint: Container marked as failed: container_1467389397754_0001_01_000024 on host: ip-10-0-2-173.ec2.internal. Exit status: -100. Diagnostics: Container released on a *lost* node 

I am sure my network parameter is working, because I tried to run this script in the same environment on a much smaller table.

Also, I know that someone posted the question 6 months ago asking for the same problem: spark-job-error-yarnallocator-exit-status-100-diagnostics-container- released , but I still have to ask because no one answered this question.

Answer 1

It seems that other nations have the same problem, so I'm just posting an answer instead of writing a comment. I'm not sure if this solves the problem, but it should be an idea.

If you are using a spot instance, you should be aware that the spot instance will be closed if the price is higher than your entry and you will run into this problem. Even if you just use a random instance as a subordinate. Therefore, my solution does not use any random instance for long-term work.

Another idea is to cut the task into many independent steps, so you can save the result of each step as a file in S3. If any error occurs, start with this step using cached files.

Answer 2

is dynamic memory allocation? I had a similar problem that I fixed using static allocation, calculating the memory of the artist, the kernel of the artist, and the artists. Try static distribution for Spark's huge workloads.

Answer 3

This means that your YARN container is not working, to debug what happened, you should read the YARN logs, use the official yarn logs -applicationId CLI yarn logs -applicationId or feel free to use and contribute to my project https://github.com/ ebuildy / yoga a YARN viewer as a web application.

You should see a lot of employee mistakes.