Use symbolic links.
I use symbolic links with julia v0.3 . It works quite well. Usually I should check the package in the lower version directory (say 0.4) and have symbolic links in the directories for 0.5 and 0.6. I do this for all packages that I am actively working on. Everything else is duplicated as part of the Pkg.add / clone process.
This works, of course, only when you have a separate branch of your package (a typical wizard) that supports all versions of julia through Compat. In cases where you have different branches for different versions of julia, you need to have separate checks for each version of julia.
aviks
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