Interestingly, in addition to @Yihui, answer if the process of copying from one machine to another changes the dates in the files so that they look outdated even when nothing has changed.
See the dates in the files associated with the copy. If you can determine which files should be newer than others, then touch them can prevent recovery.
Another option is to simply insert the pieces directly so that they do not repeat (although this means that you need to restart and soak manually if you change anything in these parts).
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